kotobuki is a Python package that can update custom mappings created in Usagi that have become outdated in a new release of the OHDSI vocabularies.
kotobuki requires Python 3.11+ and is available on PyPI:
pip install kotobukiDepending on the type of database you have, you'll also need to install the required python adapter library. E.g. for postgresql, you can use psycopg2.
See SQLAlchemy docs for a list of supported dialects.
Make sure the following tooling is installed:
Install the project and dev dependencies via uv sync --all-groups.
Then set up the git hook scripts via uv run pre-commit install.
Run nox -l for a list of available nox sessions, or simply run nox
to run the ruff linter and the pytest suite for all supported Python versions.