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Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

3,408 1,020 Updated Jun 11, 2025

CZ CELLxGENE Discover Census

Jupyter Notebook 102 27 Updated Jun 8, 2025

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

Python 218 23 Updated Jul 8, 2024

OCR, layout analysis, reading order, table recognition in 90+ languages

Python 17,649 1,175 Updated Jun 12, 2025

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

Python 510 193 Updated Apr 8, 2024

The official ERC4337 inspired wallet for the HYPLAY / HYCHAIN ecosystem.

Solidity 6 1 Updated Aug 21, 2024

🦜🔗 Build context-aware reasoning applications

Jupyter Notebook 109,547 17,821 Updated Jun 16, 2025
Jupyter Notebook 3 Updated Oct 20, 2022

Assembles a graph manifold from time series single-cell RNAseq data

MATLAB 17 3 Updated May 11, 2021

R package for integrating and analyzing multiple single-cell datasets

R 416 80 Updated May 4, 2025
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