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constantinpape / torch-em

Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

Jupyter Notebook 96 25 Updated Jun 22, 2025

computational-cell-analytics / micro-sam

Segment Anything for Microscopy

Jupyter Notebook 555 76 Updated Jun 22, 2025

computational-cell-analytics / patho-sam

Segment Anything for Histopathology

Python 33 6 Updated Jun 16, 2025

anwai98 / tukra

Convenience scripts for evaluating popular deep learning-based methods for biomedical image segmentation

Python 1 Updated May 15, 2025
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