🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
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May 29, 2024 - C++
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🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Bring your single-cell data to life
A tool that allows to get UMI counts from a single cell protein assay
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
The IDK (Industrial Development Kit) library!
Standalone tool and library allowing to work with barcoded linked-reads
Collection of tools and resources for linked-reads
The ultimate library for getting false.
shiny app for single cell RNAseq experiments, with plug-in like structure for flexible integration of tools and visualizations.
Spoiler alert: Scrum Masters and managers love 10x code Ninja developers!
Laravel API boilerplate for 10-x developers!
CWL toolkit for single-cell sequencing data analysis
R package: {rfca} Random forest-based cell annotation methods for scRNAseq analysis. {rfca} contains methods which identifies cell types using machine learning trained on a diversity of cell types, without the need for a labelled training dataset. It also allows you to train your own cell prediction models with your own labels (cell type, subtyp…
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