💾 📃 "Reads to report" for public health and clinical microbiology
Pathogen whole genome sequence (WGS) data analysis pipeline
Bacterial analysis toolbox for full ESKAPEE pathogen characterisation and profiling the resistome, mobilome, virulome & phylogenomics using WGS
This Docker image provides a ready-to-use environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data & profiling AMR, Mobilome & Virulome. It includes all required tools & dependencies, enabling reproducible, scalable analysis of NGS data in research & public health settings, particularly for low-resource environments.
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