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wsi

Here are 51 public repositories matching this topic...

BMIRDS / deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

cancer resnet microscopy sliding-windows lung wsi medical-image-analysis pathology-image histopathology-images

Updated Jun 7, 2024
Python

histolab / histolab

Library for Digital Pathology Image Processing

python data-science bioinformatics research biology hacktoberfest digital-pathology science-research pathology wsi digital-pathology-data

Updated Jun 17, 2025
Python

mahmoodlab / Patch-GCN

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

gcn pathology wsi survival-prediction histopathology wsi-images mahmoodlab

Updated May 14, 2024
Python

MarvinLer / tcga_segmentation

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

tcga medical-imaging segmentation image-segmentation tcga-data weakly-supervised-learning miccai pathology whole-slide-imaging wsi computational-pathology multiple-instance-learning tumor-segmentation histopathology data-efficient slide-image-segmentation

Updated Aug 5, 2021
Python

DIAGNijmegen / pathology-whole-slide-data

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

python deep-learning iterator wsd pathology whole-slide-imaging wsi computational-pathology wsm wsa histopathology whole-slide-image whole-slide-annotation whole-slide-mask whole-slide-dataset whole-slide-data

Updated Nov 21, 2024
Python

invoker-LL / WSI-finetuning

This is the official repository for our CVPR 2023 paper 'Task-Specific Fine-Tuning via Variational Information Bottleneck for Weakly-Supervised Pathology Whole Slide Image Classification'.

end-to-end mutual-information breast-cancer wsi computational-pathology fine-tuning information-bottleneck cervical-cancer

Updated Apr 16, 2024
Python

manuel-munoz-aguirre / PyHIST

A pipeline to segment tissue from the background in histological images

segmentation image-segmentation histology svs wsi computational-pathology histological-images histopathology

Updated Apr 2, 2023
Python

cpystan / Wsi-Caption

Official Inplementation of 《WsiCaption: Multiple Instance Generation of Pathology Reports for Gigapixel Whole Slide Images》(MICCAI 2024 Oral/ Best Paper Candidate)

python visual-language pathology wsi aigc

Updated Jun 6, 2025
Python

mil4wsi

aimagelab / mil4wsi

DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs

mil wsi

Updated Nov 29, 2024
Python

lucasrla / wsi-preprocessing

Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

pytorch libvips preprocessing fastai openslide pathology whole-slide-imaging wsi histopathology pyvips

Updated Sep 25, 2023
Python

kat

Zhengyushan / kat

The code for Kernel attention transformer (KAT)

wsi histopathology pathology-image histopathology-images whole-slide-image wsi-images histopathology-wsi wsi-encode wsi-classificaiton wsi-representation histopathology-image-classfication kernel-transformer histopathology-feature

Updated Jun 13, 2024
Python

computational-cell-analytics / patho-sam

Segment Anything for Histopathology

sam segmentation wsi histopathology nuclei-segmentation segment-anything

Updated Jun 16, 2025
Python

HKU-MedAI / ConcepPath

[npj Digital Medicine'24] Aligning Knowledge Concepts to Whole Slide Images for Precise Histopathology Image Analysis

knowledge wsi computational-pathology concept-learning

Updated Jan 7, 2025
Python

lucasrla / wsi-tile-cleanup

Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning

deep-learning pytorch libvips preprocessing fastai pathology whole-slide-imaging wsi otsu-threshold histopathology pyvips

Updated Sep 30, 2020
Python

asafamr / bertwsi

Word Sense Induction with BERT MLM

word-sense-disambiguation word-sense-induction bert wsi

Updated Jul 6, 2023
Python

tand826 / wsiprocess

Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks

machine-learning medical-imaging whole-slide-imaging wsi histopathology cytopathology

Updated Sep 8, 2023
Python

yasohasakii / WSI-SDK

Toolkit for WSI preprocess, such as resample & zoom, mask, roi selection ect.

wsi

Updated Aug 26, 2019
Python

Jonas1312 / PFA-ScanNet

PFA-ScanNet: Pyramidal Feature Aggregation With Synergistic Learning for Breast Cancer Metastasis Analysis (Architecture Only Pytorch Implementation).

cancer pfa breast wsi scannet camelyon16 pfa-scannet camelyon17 camelyon

Updated Aug 8, 2019
Python

constantjxyz / GC-SPLeM

Survival Prediction for Gastric Cancer via Multimodal Learning of Whole Slide Images and Gene Expression -- BIBM 2022

gene-expression wsi multimodal-learning graph-convolutional-network survival-prediction

Updated Dec 6, 2022
Python

smujiang / WSI2DICOM

Simple prototype of converting whole slide image (WSI) to multiframe DICOM images

convert dicom svs wsi image-format pathology-image image-format-converter image-format-conversion

Updated Nov 25, 2022
Python

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