Explore 5,000+ genomes in the terminal. Light, blazing fast 🚀, vim-motion.
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May 15, 2025 - Rust
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Bioinformatics
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Here are 258 public repositories matching this topic...
Proteomics search & quantification so fast that it feels like magic
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May 15, 2025 - Rust
Randomly subsample sequencing reads or alignments
rust coverage bioinformatics random alignment fasta bam fastq genome-analysis downsample subsampling
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Nov 29, 2024 - Rust
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
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Jul 14, 2024 - Rust
Bam Error Stats Tool (best): analysis of error types in aligned reads.
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Feb 14, 2025 - Rust
Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all
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Apr 30, 2025 - Rust
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
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Dec 30, 2020 - Rust
Command line utility for manipulating Illumina-generated FASTQ files.
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Feb 28, 2025 - Rust
Compacted and colored de Bruijn graph construction and querying
rust bioinformatics sequencing bioinformatics-pipeline genome-assembly de-novo-assembly debruijn-graph
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Jun 19, 2025 - Rust
Oxbow makes genomic data ready for high-performance analytics.
python data-science bioinformatics r genomics ngs pandas rust-lang dataframe fair-data apache-arrow multiomics polars
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Jun 20, 2025 - Rust
Yet Another Chimeric Read Detector
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Nov 7, 2024 - Rust
👷 Fasten toolkit, for streaming operations on fastq files
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Apr 9, 2025 - Rust
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
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Jun 20, 2025 - Rust