LIANA: a LIgand-receptor ANalysis frAmework
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Aug 7, 2024 - R
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cellchat
Here are 9 public repositories matching this topic...
A comprehensive computational pipeline that bridges single-cell genomics and cheminformatics to accelerate Alzheimer's Disease research. This project integrates advanced bioinformatics and machine learning to create a seamless workflow from raw single-cell RNA sequencing data to predictive drug discovery models.
python flask machine-learning bioinformatics rna-seq r cheminformatics bioinformatics-pipeline drug-discovery single-cell alzheimers-disease qsar-models cellchat milor qsar-modeling
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Jul 3, 2025 - Jupyter Notebook
Generate Sankey plots from merged CellChat objects
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Jan 21, 2025
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
python bioinformatics r sequencing velocity epigenetics rna transcriptome single-cell pathway-analysis gsea regeneration seurat rna-velocity single-nuclei-rna-sequencing single-nuclei cellchat single-cell-rna-sequencing retinal-ganglion-cell optic-nerve-crush
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Jun 24, 2024 - R
Customize your specific organism cellchatdb
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Feb 20, 2024 - R
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
python r velocity rna single-cell bone seurat light-sheet-microcopy pseudocolor rna-velocity cartilage stem-cells cellchat
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Aug 18, 2023 - Jupyter Notebook
Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital
python r velocity rna transcriptomics single-cell forceatlas2 seurat microglia scanpy macrophage rna-velocity scvelo cellchat oir socs3 spp1 gobp
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Dec 16, 2023 - Jupyter Notebook
This project analyzes how differences in the mathematical frameworks of CellChat and CellPhoneDB affect cell–cell communication inference from single-cell RNA-seq data in diet-induced liver disease.
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Jun 26, 2025 - Jupyter Notebook
Accelerate Alzheimer's Disease research with our AD-scRNA2QSAR pipeline. Transform scRNA-seq data into QSAR models seamlessly. 🌟🛠️
python flask machine-learning bioinformatics rna-seq r cheminformatics bioinformatics-pipeline drug-discovery single-cell alzheimers-disease qsar-models cellchat milor qsar-modeling
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Jul 5, 2025 - Jupyter Notebook
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