Self-supervised learning for isotropic cryoET reconstruction
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Dec 29, 2024 - Python
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cryo-et
Here are 41 public repositories matching this topic...
A curated list of awesome computational cryo-ET methods.
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Oct 16, 2024
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Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms
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Apr 23, 2025 - Jupyter Notebook
deep structural disentanglement
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Apr 25, 2025 - Python
cryo-ET particle picking by representation and metric learning
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May 7, 2025 - Python
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
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Jan 30, 2024 - Python
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
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Mar 11, 2025 - Python
TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
processing template-matching pipeline structural-biology cluster parallel parallel-computing alignment tomography cryo-em reconstruction automated em et cluster-computing tem cryoem cryo-et particle-picking cryoet
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Apr 15, 2025 - MATLAB
TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing
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May 7, 2025 - Python
Cellular content mining and particle localization
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Apr 8, 2025 - Python
structural heterogeneity analysis for cryo-ET subtomogram
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Apr 9, 2025 - Python
Two-Dimensional Template Matching implemented in Python
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Apr 24, 2025 - Python
Toolbox for post-correlation cryo-CLEM workflow developed at Chlanda Lab, Heidelberg University.
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Oct 17, 2022 - Java
PyTorch implementation of "Open-set Recognition of Unseen Macromolecules in Cellular Electron Cryo-Tomograms by Soft Large Margin Centralized Cosine Loss"
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Oct 14, 2020 - Python
Denoising and segmentation networks for cryoET based on U-net architecture implemented in Pytorch
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Nov 10, 2022 - Jupyter Notebook
A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
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Apr 4, 2025 - Python
A tool to normalize CryoET data by matching amplitude spectrums.
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Oct 17, 2021 - Python
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