A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
workflow nanopore pipeline nextflow shotgun filter metagenomics edna microbiome fastq metabarcoding long-reads taxonomic-classification de-identification nf-core short-reads taxonomic-profiling decontamination
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Updated
Apr 30, 2025 - Nextflow