Parse and process FASTA and FASTQ formatted files of biological sequences.
A secure encryption tool for genomic data
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
BioC++ Input/Output library
This package enables you to deal with biological sequence files easily.
A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.
Small package used to parse a file in the Fasta format
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
FLiCK - Format LeveragIng Compression frameworK
Removes duplicate sequences in multifasta file
simple and convenient program to convert fasta sequences to fastq sequences
Python Scripts for Haim Lab (Microbiology Research) Projects
fakit: a simple program for fasta file manipulation
Idris (Idris2) port of the Haskell biocore library.
Hadoop Sequence Parser (HSP) library
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)
Small and fast FASTA sequences length fetcher
Idris (Idris2) port of the Haskell biofasta library.
Add a description, image, and links to the fasta-format topic page so that developers can more easily learn about it.
To associate your repository with the fasta-format topic, visit your repo's landing page and select "manage topics."