fastp

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digo4 / Clinical-Genomics

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

picard samtools bwa-mem varscan bcftools bowtie2 trimgalore cutadapt fastqc freebayes fastp gatk4 trimmomatic gatk-bestpractices gatk-joint-variant-calling-workflow gatk-cnv gatk4-haplotypecaller

Updated Jan 17, 2024
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marianasstomas / IBBC_2024_Exame

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Pipeline para análise de dados genómicos com FastQC, MultiQC e FastP. Inclui scripts para preparação de ambiente, análise de qualidade e execução interativa para verificação de comandos no Conda.

multiqc fastqc fastp

Updated Dec 11, 2024
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groverkaushal / RNAseq-Workflow-Mapping-Assembly-and-Differential-Gene-Expression-Analysis

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This project uses an workflow pipeline to generate map and assemble RNAseq reads to a reference genome. Furthermore, we generate counts data and identify differentially expressed genes from 2 conditions.

hisat2 rna-seq-analysis samtools cufflinks mapping-tools rna-seq-pipeline stringtie fastp differentially-expressed-genes assembly-tools

Updated Sep 4, 2024
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