The generic genome-scale metabolic model of Homo sapiens
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May 18, 2025 - MATLAB
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genome-scale-models
Here are 19 public repositories matching this topic...
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
systems-biology metabolic-models metabolic-reconstruction constraint-based-modeling metabolic-engineering gap-filling human-metabolism genome-scale-models sysbio
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May 12, 2025 - MATLAB
The consensus GEM for Saccharomyces cerevisiae
python biology matlab systems-biology consensus reconstruction hacktoberfest yeast metabolic-models genome-scale-models saccharomyces-cerevisiae standard-gem
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Apr 3, 2025 - MATLAB
A container for all enzyme constrained models created by GECKO.
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Jul 4, 2022 - MATLAB
Genome-scale model of Yarrowia lipolytica.
systems-biology stoichiometric-reactions metabolic-models metabolic-network metabolic-reconstruction constraint-based-modeling metabolic-engineering omics-data-integration yarrowia-lipolytica genome-scale-models
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Jul 30, 2021 - MATLAB
TRIMER is a package for building integrated metabolic–regulatory models base on Bayesian network. TRIMER can be used for knockout phenotype prediction and knock flux prediction.
bayesian-network metabolic-network flux-balance-analysis genome-scale-models metabolic-regulatory-model knock-out-phenotype-prediction knock-out-flux-prediction transcriptional-regulations
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Apr 29, 2025 - MATLAB
DeltaFBA is a set of MATLAB functions that employs constraint-based modeling, in combination with differential gene expression data, to evaluate changes in the intracellular flux distribution between two conditions.
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Aug 2, 2021 - MATLAB
COMMIT: Community-dependent gap-filling considering metabolite leakage
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Sep 26, 2024 - MATLAB
IgemRNA is an open access toolbox for transcriptome data statistical and biochemical network topology-based analysis. IgemRNA was developed in the MATLAB environment in order to take advantage of the up-to-date and most commonly distributed GSM modelling tool Cobra Toolbox 3.0 and spreadsheet file capabilities.
tutorial reconstruction transcriptomics metabolic-models omics-data-integration genome-scale-models cobratoolbox
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May 5, 2022 - MATLAB
Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.
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Feb 16, 2020 - MATLAB
The consensus GEM for Kluyveromyces marxianus
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Feb 25, 2020 - MATLAB
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Nov 30, 2021 - MATLAB
Supplementary code and results from doi:10.1101/2020.02.20.957662
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Oct 20, 2020 - MATLAB
Genome-scale metabolic model of Cordyceps militaris
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Apr 19, 2020 - MATLAB
Genome-scale metabolic model of Rhodotorula toruloides
systems-biology yeast metabolic-reconstruction constraint-based-modeling metabolic-engineering genome-scale-models sysbio
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Apr 19, 2020 - MATLAB
Integration of cofactors with proteome-constrained model of Saccharomyces cerevisiae
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Jun 1, 2021 - MATLAB
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Nov 5, 2019 - MATLAB
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