Horizontal gene transfer (HGT) identification pipeline
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May 17, 2023 - Python
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hgt
Here are 15 public repositories matching this topic...
Rapid and simple taxonomic profiling of genome and metagenome contigs
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Jun 13, 2023 - Python
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
metagenomics microbiome hgt k-mer strain bacterial-genome-analysis horizental-gene-transfer structual-variation mobile-gene-element
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Aug 8, 2024 - Python
A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein language models
knowledge-graph gene-ontology hgt protein-function-prediction gene-ontology-terms heterogeneous-graph-learning protein-language-model heterogeneous-graph-transformer biological-knowledge-graph
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May 16, 2025 - Python
A simulator for horizontal gene transfer (HGT) in microbial communities
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Oct 5, 2020 - Python
compare multiple fasta files using nucmer and extract aligned fragments
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Sep 27, 2018 - Python
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May 24, 2024 - Python
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
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Jul 6, 2021 - Python
How can we discriminate contaminants from HGT? Alien indices are often used to screen out foreign sequences, but can 'overclean' by removing bona fide HGT. This script leverages metadata about each DNA/AA sequence (i.e. whether it is spliced, has a polyA tail or spliced leader), and uses that to assess the extent to which AI-based cleaning is re…
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Feb 22, 2021 - Python
Flight Simulator Through Real World Terrain Via NASA Hgt (Height) Files and Matplotlib 3d Plot In Python 3 Using a Kivy GUI
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Mar 7, 2021 - Python
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