host-read-removal

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gmboowa / GenoSweep

GenoSweep is an automated genomic analysis pipeline processing raw FASTQs through quality control, host read removal, reference alignment (BWA), variant calling (bcftools), and consensus generation. Designed for pathogen/viral genomes, it ensures efficient, standardized processing from raw reads

variant-calling reference-based-assembly host-read-removal

Updated May 16, 2025
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host-read-removal

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gmboowa / GenoSweep

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