A Knowledge Graph of Common Chemical Names to their Molecular Definition
IUPAC SMILES+ Specification
Transformer-based molecular generative model for antiviral drug design
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
Diffusion-based generative drug-like molecular editing with chemical natural language
A tool to convert IUPAC representations of glycans into SMILES strings.
Blue Obelisk Data Repository - your one stop place of element and isotope data.
IUPAC-based large-scale molecular pre-trained model for property prediction and molecular generation
Encoder-decoders for translating different chemical formats.
Algorithms for Bionformatics - Python Module to handle biological sequences and run common algorithms and techniques
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
Translate nucleotides (DNA & RNA) to aminoacid using IUPAC ambiguity codes
Biostrings port in Java (for study)
Collapse a set of redundant kmers to use IUPAC degenerate bases
pattern matching with error for small pattern size (<= 64) for DNA and IUPAC
🧪 Naming non-cyclical alkanes using the official IUPAC nomenclature
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