Nextflow pipeline for analysis of direct RNA Nanopore reads
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Updated
Apr 29, 2025 - Nextflow
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Nextflow pipeline for analysis of direct RNA Nanopore reads
A collection of unexpected challenges and learnings with nextflow and nf-core.
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
A proof of concept daisy-chaining Nextflow workflows
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Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Flujos de trabajos desarrollados y automatizados en el Intituto Nacional de Medicina Genómica para el procesamiento de datos genómicos y transcriptómicos.
Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow
Workflow for MAG quality assessment and taxonomical annotation.
Template for creating Nextflow DSL2 pipelines
avantonder/assembleBAC-ONT is a bioinformatics pipeline that de novo assembles and annotates Oxford Nanopore (ONT) long-read sequence data.
Python library to execute batches of jobs using nextflow.
Supporting data for the publication "Investigating the performance of Oxford Nanopore long-read sequencing with respect to Illumina microarrays and short-read sequencing"
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
bacQC is a bioinformatics analysis pipeline for assessing the quality of bacterial isolate sequence data
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