Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
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Feb 17, 2022 - HTML
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nextflow
Here are 39 public repositories matching this topic...
compare sequences to a shared root reference sequence.
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Oct 19, 2021 - HTML
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
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Feb 29, 2024 - HTML
A Reproducible Untargeted Metabolomics Data Processing Pipeline
docker machine-learning big-data nextflow reproducible-research singularity statistical-analysis mass-spectrometry pathway-analysis metabolomics-data
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Mar 18, 2021 - HTML
Nextflow Workshop at Rocky Mountain Genomics HackCon 2018
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Jun 19, 2018 - HTML
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
nextflow docker-container docker-image recipe singularity singularity-containers nextflow-scif nextflow-pipelines scif-recipe nextflow-workflow
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Feb 25, 2019 - HTML
In this module, you will learn how to use a Docker container to analyze amplicon sequencing metagenomics data with common tools such as qiime2 and PICRUSt2
docker aws nextflow gcp metagenomics aws-batch biomarker-discovery microbiome-analysis quorum-sensing biofilm google-batch
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Jun 6, 2025 - HTML
Short lessons, training various Research Software Engineering tools useful to our work.
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Jun 18, 2025 - HTML
Nextflow Tutorial - Variant Calling Edition
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Feb 17, 2024 - HTML
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
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Mar 11, 2025 - HTML
Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance
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Mar 13, 2025 - HTML
Nextflow workflow for basic HiC data processing
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Feb 20, 2025 - HTML
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
genome nextflow sequencing wgs ngs-analysis outbreak-detection bacterial-genomes outbreaks bacterial-wgs-training wgs-analysis
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Oct 31, 2024 - HTML
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