Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
-
Updated
Feb 11, 2025 - Python
#
ome-zarr-converter
Here are 19 public repositories matching this topic...
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
-
Updated
Jun 20, 2025 - Python
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
-
Updated
Jun 17, 2025 - Python
Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
-
Updated
Jun 20, 2025 - Python
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
workflow image nextflow conversion file-format ome-tiff ome zarr bioimage ome-zarr ome-zarr-converter
-
Updated
Mar 14, 2025 - Python
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
-
Updated
May 28, 2025 - Python
-
Updated
Jun 18, 2025 - Python
Main tasks for the Fractal analytics platform
-
Updated
Jun 17, 2025 - Python
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
-
Updated
Jun 10, 2025 - Python
Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
-
Updated
Jun 4, 2025 - Python
A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.
-
Updated
May 20, 2025 - Python
Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.
-
Updated
May 16, 2024 - Python
A collection of fractal tasks to run plantseg workflows
-
Updated
Feb 12, 2025 - Python
Fractal tasks for the Opera/Operetta microscope and drug profiling
-
Updated
Jun 12, 2025 - Python
A collection of fractal tasks to convert HCS Plates to OME-Zarr
-
Updated
May 12, 2025 - Python
Simple converter from the drogon plate format to OME-Zarr
-
Updated
Jun 3, 2025 - Python
Tooling to build ome-zarr plate converters
-
Updated
Jun 12, 2025 - Python
Converter from the Lif files (Leica Microscope) to OME-Zarr format.
-
Updated
May 12, 2025 - Python
Improve this page
Add a description, image, and links to the ome-zarr-converter topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the ome-zarr-converter topic, visit your repo's landing page and select "manage topics."