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pdb-database

Here are 20 public repositories matching this topic...

Biswa96 / PDBDownloader

Standalone program to download PDB Symbol files for debugging without WDK

c windows pdb reverse-engineering reversing pdb-files pdb-database

Updated Jun 20, 2019
C

gu1729 / pdbdump

Dump content of PDB files (program databases) in JSON, XML, SQLite3, CSV etc.

windows code pdb developer-tools code-quality pdb-files pdb-database

Updated Oct 21, 2021
C++

mdciao

gph82 / mdciao

mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data

python structural-biology protein-structure molecular-dynamics computational-chemistry amino-acids kinases pdb-database gpcr gpcr-numbering g-protein

Updated May 7, 2025
Python

johnnytam100 / pdb2uniprot

A Python script to map PDB ID + chain ID to UniProt ID.

bioinformatics mapping uniprot uniprot-ids bioinformatics-scripts uniprotkb pdb-files pdb-database bioinformatics-tool rcsb pdb-structure

Updated Mar 7, 2024
Python

project-gemmi / mmcif-benchmark

Benchmarks for reading and interpreting mmCIF files

benchmark protein-structure mmcif pdb-database

Updated Aug 30, 2021
Python

Utilon / MutaPipe_Repo

A bioinformatics pipeline to identify the best available PDB structures for all available variants for specified genes of interest

bioinformatics 10000 pipeline mutations clinvar pdb-database

Updated Oct 3, 2023
Python

Spenhouet / PDBViewer

Visualization of proteins directly from the PDB database or from a .pdb file.

pdb protein-data-bank protein pdb-files 3d-viewer pdb-database

Updated Feb 9, 2018
Java

multimeric / mmcifix

Fixes mmCIF protein structure files

bioinformatics structural-biology crystallography mmcif pdb-database

Updated Mar 24, 2023
Python

lucaspalmeira / bioinfo

Guia de programas e ferramentas de bioinformática e química computacional

python linux machine-learning bioinformatics molecular-dynamics biopython genbank pymol shell-script drug-design ncbi-blast molecular-modeling pdb-database alignment-algorithm

Updated Jan 21, 2025

WillyBruhn / PredictingProteinInteractions

machine-learning neuronal-network pdb-database

Updated Jul 11, 2021
R

MooersLab / ACA2022

Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association

python vim emacs sublime-text protein-structure molecular-graphics pymol cloud-computing literate-programming vsc aca pdb-database colab-notebook ghosttext

Updated May 25, 2024

QDcvd / Tripeptide-single-amino-acid-database-generator

A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete

python protein pymol pdb-files modeller pdb-database pdb-structure

Updated May 18, 2021
Python

YSChen0609 / PDB-Protein-Analysis

Modules for PDB Data parsing and Ramachandran Analysis.

ramachandran-plot pdb-database

Updated Feb 16, 2024
Python

QDcvd / DNA-Sequence-alignment

基于modeller官网脚本进行开发的序列比对脚本

protein-structure sequence-alignment pdb-files modeller pdb-database

Updated Jun 12, 2021
Python

ravila4 / Pharos-to-PDB

Mapping Pharos Targets to PDB IDs

protein-structure pdb-database

Updated Jun 5, 2019
Jupyter Notebook

Tejas1415 / PDB-Protein-Structure-Prediction

A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.

proteins pdb structures cnn-keras prediction-model distance-matrix pdb-database pdb-parser

Updated Mar 15, 2019
Python

Guillawme / insights-from-the-pdb

Various statistics on the Protein Data Bank

pdb pdbe pdb-database pdbe-s-rest-api pdb-dataset

Updated Feb 11, 2024
HTML

julianspaeth / pdb-viewer

A PDB Viewer Application implemented completely in JavaFX

java bioinformatics pdb javafx protein pdb-files pdb-database

Updated Feb 2, 2018
Java

UWSEDS-aut17 / OPMxplore

uwseds-group-OPMxplore created by GitHub Classroom

pdb membrane-proteins pdb-database

Updated Dec 14, 2017
Jupyter Notebook

guzikine / pdb-archive-filter

This script enables users to filter through PDB archive in order to obtain simple data from each file.

bash unix pdb filter pdb-database

Updated Jan 10, 2023
Perl

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