WtP: Phage identification via nextflow and docker or singularity
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Jul 4, 2025 - Nextflow
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phages
Here are 14 public repositories matching this topic...
Phigaro is a scalable command-line tool for predicting phages and prophages
bioinformatics genomics bioinformatics-pipeline biological-data-analysis bioinformatics-analysis genomic-data-analysis phage genomic-regions bioinformatics-tool phages prophage
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Jan 8, 2024 - HTML
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
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Jul 12, 2022
Phage-Host Interaction Search Tool
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Jul 8, 2024 - C++
Investigating the gut virus communities associated with colon cancer.
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Sep 20, 2020 - PostScript
Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes
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Oct 4, 2024 - Python
The art of decorating a phage genome by gluing feature cutouts into it.
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Oct 4, 2022 - Python
The PhageBox is a digital microfluidics device that integrates temperature and magnetic control modules at the hardware level. This repository contains the embedded software which contains a finite state machine for representing PCR and a graphical user interface for visual feedback and operation.
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Apr 7, 2023 - C++
Code and data used to perform the tAI analysis in deCarvalho et al. (2023)
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Apr 28, 2024 - Scheme
Code and data for the analysis of TF-binding sites positional entropy in phage genomes, used in Mascolo et al. (2022)
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Feb 26, 2023 - Python
Fast and accurate whole-genome clustering of (actino) bacteriophages
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Feb 3, 2022 - Python
PhageFilter uses a Sequence Bloom Tree (SBT) to filter bacteriophage reads from metagenomic files.
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Dec 10, 2023 - Rust
Official website of the Burstein Lab at Tel Aviv University - computational microbiology using NLP, machine learning, and large language models to study CRISPR-Cas systems, antimicrobial resistance, horizontal gene transfer, and microbial interactions
nlp machine-learning natural-language-processing bioinformatics microbial-genomics crispr microbiology horizontal-gene-transfer antibiotic-resistance plasmids phages microbial-interactions large-language-models computational-microbiology
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Jul 5, 2025 - CSS
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
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Jul 31, 2023 - Python
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