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neighbor-conservation Public
A computational methods for evaluate conservation of genes' neighboring relationship
Python UpdatedMay 11, 2025 -
CMDTarget Public
Comparative modeling based denoising for sRNA target prediction
Python UpdatedMay 6, 2025 -
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FEMTarget Public
Flexible evolutionary modeling for sRNA target prediction
Python UpdatedApr 7, 2025 -
Code for "A Conserved, Protective Stem Loop Structure Irrespective of Rho Factor Dependency Enable Comparative Analysis of Bacterial Transcript 3’ Ends"
Jupyter Notebook UpdatedNov 20, 2024 -
sortMePromoter Public
Evaluate the likelihood of a 50 mer of being bacteria promoter
Python UpdatedJan 13, 2024 -
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cfRNA-pipe Public
A light weight pipeline for RNA-seq analysis. Orignally design for cell free RNA-seq data analysis, but can in principle applied to any paired end long RNA sequencing data
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ez-prediction Public
Simple traditional machine learning method for clinical prediction, all implemented in R
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network-evolution Public
Simulation to illustrate how does gene duplication leads to the scale-free property of biological network
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sequence-analysis-notes Public
Toy implemantations for some bioinformatics algorithms
C++ UpdatedApr 21, 2021 -
shapemapper2 Public
Forked from Weeks-UNC/shapemapper2Public repository for ShapeMapper 2 releases
C++ MIT License UpdatedAug 2, 2019
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