FAIRyMAGs - BFSP Project Management
Paired short reads (e.g.: https://zenodo.org/records/15089018)
- Upload your data to Galaxy (currently only usegalaxy.eu supports all the tools / DBs) or use a dedicated data fetch tool for published data like toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fastq_dump/3.1.1+galaxy1.
- Group your data in a paired collection
- Perform: QC workflow
- Optionally: Remove host contamination workflow
- Optionally: Group reads for co-/grouped-assembly workflow
- Perform: MAGs-genertion workflow
- Note: Until the workflows are published on IWC the latest version of the workflows as published on usegalaxy.eu should be documented here: Workflows
- Please Tag related workflows with:
#FAIRyMAGs