Stars
Demonstrating the Dashboard++ method of organizing a vault in Obsidian
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the …
Color palette package inspired by National Parks
This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward finding cures for Inflammatory Bowel Disease (IBD). To lear…
Virus Identification By iteRative ANnoTation
A playbook for systematically maximizing the performance of deep learning models.
Course packets for Bacterial Genetics and Physiology. Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
command line bioinformatic scripts written in R
Code for the book Deep Learning with PyTorch by Eli Stevens, Luca Antiga, and Thomas Viehmann.
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
🀫 Create Chicklet (Rounded Segmented Column) Charts
Curated list of awesome GAN applications and demo
A technical report on convolution arithmetic in the context of deep learning
Obsidian plugin which integrates your academic reference manager with the Obsidian editor. Search your references from within Obsidian and automatically create and reference literature notes for pa…
A wiki system with complex functionality for simple integration and a superb interface. Store your knowledge with style: Use django models.
This repository contains implementations and illustrative code to accompany DeepMind publications
Tidy data structures, summaries, and visualisations for missing data
Technologically Assisted Reviews in Empirical Medicine
Browse Covid-19 & SARS-CoV-2 Scientific Papers with Transformers 🦠 📖
A game theoretic approach to explain the output of any machine learning model.
Python bindings for the TaxonKit library
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
RTF/ODF-Scan for Zotero add-on