Stars
Visualise and analyse nanopore (ONT) raw signals
Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
Install latest version of Aspera Connect and show example how to use it for downloading sequening data.
Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
ruptures: change point detection in Python
SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
a long read simulator that can imitate many types of read problems
argparse.ArgumentParser wrapper to parse TOML files from the command-line
Opiniated RAG for integrating GenAI in your apps 🧠 Focus on your product rather than the RAG. Easy integration in existing products with customisation! Any LLM: GPT4, Groq, Llama. Any Vectorstore: …
DTWNet: a Dynamic Time Warping Network
An implementation of soft-DTW divergences.
using Spring for DTW to find sequence vs sequence
Repository for the SCS Spring School on Digital Chemistry
A simple toolkit for manipulating nanopore signal data
Spatio-temporal alignements: Optimal transport in space and time
Task manager with Todoist & Nextcloud support designed for GNOME
SBI Workshop jointly by Helmholtz AI + ML ⇌ Science Colaboratory
Code pipeline for the PaccMann^RL in iScience: https://www.cell.com/iscience/fulltext/S2589-0042(21)00237-6
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology