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davetang / Cancer_notes
Forked from mdozmorov/Cancer_notesA continually expanding collection of cancer genomics notes and data
A tool for detecting somatic variants in single cell data
A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic …
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of cancer patients
A curated list of awesome ggplot2 tutorials, packages etc.
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
Area-Proportional Euler and Venn Diagrams with Ellipses
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
Integrative pathway enrichment analysis of multivariate omics data
Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schafflick1, Xu, Hartlehnert1 et. al
Build and run Docker containers leveraging NVIDIA GPUs
Docker Containers for Bioconductor
Ready-to-run Docker images containing Jupyter applications
Haplotype-aware CNV analysis from single-cell RNA-seq
Utilizing single-cell omics from patients tumor to predict response and resistance.
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
R package for the joint analysis of multiple single-cell RNA-seq datasets
A scripting and command-line front-end for GNU R