Stars
ReText: Simple but powerful editor for Markdown and reStructuredText
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
Repository backing the creation of standalone installers for ABBA
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.
[CVPR 2023 (Highlight)] Offical implementation of the paper "RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction".
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Easily install and load packages from the tidyomcis ecosystem
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Genome modeling and design across all domains of life
Apache Spark - A unified analytics engine for large-scale data processing
A lightweight version of R Markdown (without using Pandoc or knitr)
Single Cell Spatial Transcriptomics of the Murine Embryonic Palate Links Pax9 to Patterning and Organization of Extracellular Matrix Components
A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
ASCII generator (image to text, image to image, video to video)
StarDist - Object Detection with Star-convex Shapes
QuPath - Open-source bioimage analysis for research
Base Classes and Functions for Mass Spectrometry and Proteomics