Stars
Python package for connecting services and building data pipelines
Nextflow pipeline wrapper for executing Cell Ranger
A curated list of awesome Bioinformatics libraries and software.
CWL CommandLineTool descriptions for biology/life-sciences related applications
Seven Bridges Python library for programatic generation of CWL workflows.
A collection of DNA processing tools / modules used in the ICGC ARGO alignment workflow
CWL+Singularity implementation of an RNA editing workflow
This is an example of a workflow that works with the Synapse submission system.
code for managing data coordinating operations through Synapse
Sage-Bionetworks / amp-rnaseq
Forked from jaeddy/amp-rnaseqCode for reprocessing the RNAseq data from AMP-AD.
CWL interface to the Synapse command line.
An service to auto provision resources on AWS scicomp
Standardized workflows for AMP-AD data processing and analysis
Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
Open Science Grid Workflow That Creates Gene Expression Matrices (GEMs) from SRA/FASTQ NGS Files