Genome Assembly tools are added by pipeline. Welcome contribute and get in touch!
Google Group | Volunteers | CONTRIBUTING
| Name | Introduction | Paper | Url | Note |
|---|---|---|---|---|
| GenomeScope | Fast genome analysis from unassembled short reads. | Bioinformatics | Github | |
| Name | Introduction | Paper | Url | Note |
|---|---|---|---|---|
| HIFIASM | Hifiasm is a fast haplotype-resolved de novo assembler initially designed for PacBio HiFi reads. | [nature methods]([Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm ) | [Github](chhylp123/hifiasm: Hifiasm: a haplotype-resolved assembler for accurate Hifi reads (github.com)) | Gene assemble |
| Name | Introduction | Paper | Url | Note |
|---|---|---|---|---|
| 3D-DNA | Scaffold genome with Hi-C data | Science | Github | Use Hi-C data |
| Name | Introduction | Paper | Url | Note |
|---|---|---|---|---|
| Name | Introduction | Paper | Url | Note |
|---|---|---|---|---|
Genome assembly evaluation tools.
| Name | Introduction | Paper | Url | Note |
|---|---|---|---|---|
| QUAST | a quality assessment tool for evaluating and comparing genome assemblies. | Bioinformatics | Github | |
| BioNanoAnalyst | a visualisation tool to assess genome assembly quality using BioNano data. | BMC Bioinformatics | Github | Use BioNano data |