Stars
This is the standalone version of the EviAnn pipeline
sinhakrishnendu / babappa
BAsh-Based Automated Parallel Positive selection Analysis
Full automatic pipelines to mine OR, TAAR, V2R and V1R genes from any vertebrate genome
the scripts were used to perform comparative genomic analysis
A tracked repository dedicated to gene annotation tracking for Myotis species
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
The toolbox used to deal with cactus whole genome alignments
dukecomeback / tutorials
Forked from millanek/tutorialsTutorials on phylogenetic and phylogenomic inference
CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
Repository for code and files related to the manuscript Vargas-Chávez et al. 2024. A punctuated burst of massive genomic rearrangements by chromosome shattering and the origin of non-marine annelids
Calculate circos format data of GC content and GC skew from genome data.
Scripts and pipeine for Genome_assembly_annotation
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
Convergence analysis using relative rate and correcting for phylogenetic relatedness
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.