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OmicsML / awesome-foundation-model-single-cell-papers

302 36 Updated Jul 5, 2025

theislab / nicheformer

Repository for Nicheformer: a foundation model for single-cell and spatial omics

Jupyter Notebook 94 8 Updated Mar 25, 2025

seandavi / awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

3,429 1,022 Updated Jun 24, 2025
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