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Open Drug Discovery Toolkit

Python 439 122 Updated Dec 13, 2022

Cheminformatics tool that extends the decomposition of molecules into Bemis-Murcko frameworks.

Python 52 6 Updated Mar 10, 2025

ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX, for the generation and analysis of scaffold networks and scaffold trees.

Python 182 40 Updated Jan 27, 2022

Analyzing chemical databases and predicting reaction conditions with cheminformatics

Python 36 15 Updated Jun 2, 2025

A cheminformatics extension for the SQLAlchemy database toolkit.

Python 40 14 Updated Feb 24, 2023

A deep learning model for small molecule drug discovery and cheminformatics based on SMILES

Python 167 28 Updated Jun 20, 2023

A Python library for structural cheminformatics

Python 101 20 Updated Apr 30, 2025

Enable cheminformatics and quantum chemistry

Python 75 17 Updated Jan 11, 2024

The Rosetta Bio-macromolecule modeling package.

C++ 281 96 Updated Jun 27, 2025

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

Python 671 131 Updated Apr 20, 2023

ChemML is a machine learning and informatics program suite for the chemical and materials sciences.

Python 168 32 Updated May 5, 2025

⚗ A package useful for chemistry written in Python

Python 594 81 Updated Jun 22, 2025

COCONUT (COlleCtion of Open Natural prodUcTs): A comprehensive platform facilitating natural product research by providing data, tools, and services for deposition, curation, and reuse.

PHP 31 2 Updated Jun 19, 2025

The repository contains the network and the related scripts for encoder-decoder based Chemical Image Recognition

Python 95 26 Updated Jan 30, 2025

Recognising hand-drawn molecules with neural networks

Python 30 5 Updated Nov 5, 2022

Convert SMILES to PDF 2D Skeletal Diagrams and back again.

Python 7 2 Updated Oct 3, 2023

Thermodynamics and Phase Equilibrium component of Chemical Engineering Design Library (ChEDL)

Python 688 119 Updated Mar 16, 2025

Message Passing Neural Networks for Molecule Property Prediction

Python 2,001 653 Updated Jun 28, 2025

Python for Materials Machine Learning, Materials Descriptors, Machine Learning Force Fields, Deep Learning, etc.

Jupyter Notebook 416 87 Updated Jun 2, 2025

The OGB-LSC is the Large Scale Competition by Open Graph Benchmark to help accelerate research into machine learning on graph structured data

Jupyter Notebook 77 14 Updated Jul 25, 2024

Crystal Graph Neural Networks

Python 109 24 Updated Apr 20, 2024

Scikit-learn compatible library for molecular fingerprints

Python 237 17 Updated Jun 28, 2025

Official Repository for the Uni-Mol Series Methods

Python 892 142 Updated May 29, 2025

A Python package for calculating molecular features

Python 175 28 Updated May 6, 2025

Universal cheminformatics toolkit, utilities and database search tools

C++ 352 113 Updated Jun 27, 2025

[ICLR 2024] Domain-Agnostic Molecular Generation with Chemical Feedback

Python 169 15 Updated Dec 17, 2024
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