Stars
This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of top…
scPred package for cell type prediction from scRNA-seq data
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Haplotype-aware CNV analysis from single-cell RNA-seq
A collection of tools to process single-cell omics datasets.
This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
Efficient genotyping bi-allelic SNPs on single cells
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
A python package for calculating local cell specific networks
gProfiler is a system-wide profiler, combining multiple sampling profilers to produce unified visualization of what your CPU is spending time on.
A package to help convert different single-cell data formats to each other
A modern, high customizable, responsive Jekyll theme for documentation with built-in search.
R package for detecting doublets in single-cell RNA sequencing data
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
Draw phylogenetic trees of tumor evolution
Practice Multi-Platform Microarray Tutorial