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A list of interesting genome browser and genome visualization programs

TypeScript 965 123 Updated May 27, 2025

A TTS model capable of generating ultra-realistic dialogue in one pass.

Python 16,445 1,320 Updated May 27, 2025

Cell2Sentence: Teaching Large Language Models the Language of Biology

Jupyter Notebook 147 18 Updated May 21, 2025

Genome modeling and design across all domains of life

Jupyter Notebook 2,797 295 Updated May 27, 2025

The figure scripts pertaining to the manuscript titled "Genomic structures and regulation patterns at regions of HPV integration in cervical cancer"

HTML BFD7 1 1 Updated Aug 13, 2024

Focus on prompting and generating

Python 44,965 7,018 Updated Jan 24, 2025

Convert PDF to markdown + JSON quickly with high accuracy

Python 25,380 1,625 Updated May 27, 2025

Interview of PhD in bioinformatics/biostatistics

Jupyter Notebook 1 Updated Mar 16, 2021

Analysis code for a cohort of Nanopore-sequenced tumours.

HTML 4 Updated Sep 5, 2024

The best way to write secure and reliable applications. Write nothing; deploy nowhere.

Dockerfile 63,106 4,750 Updated Aug 7, 2024

Structural variation caller using third generation sequencing

Python 592 96 Updated Apr 14, 2025

SV detection tool for nanopore sequence reads

Python 91 12 Updated Apr 2, 2025

Somatic structural variant caller for long-read data

Python 63 3 Updated May 23, 2025

python Circos

Python 358 65 Updated Jun 14, 2024

Methylation Phasing for Nanopore Sequencing

Python 48 5 Updated Mar 5, 2023

Never use print for debugging again

Python 16,482 950 Updated Apr 10, 2025

An extremely long review of R.

629 31 Updated Jul 25, 2023

CADD-SV – a framework to score the effect of structural variants

Python 14 4 Updated Mar 17, 2025

Merging, Annotation, Validation, and Illustration of Structural variants

Python 75 14 Updated Aug 22, 2023

Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)

94 14 Updated Aug 7, 2022

A curated list of nextflow based pipelines

590 90 Updated Oct 27, 2022

🔗Genome assembly scaffolder using minimizer graphs

Python 83 13 Updated Oct 2, 2024

a collection of scripts for organising bacterial genomes by species

Python 76 9 Updated Mar 18, 2022
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