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1.1.0

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ObsPy 1.1.0

Changelog:

1.1.0: (doi: 10.5281/zenodo.165135)
 - General:
   * Read support for Guralp Compressed Format (GCF) waveform data,
     obspy.io.gcf (see obspy#1449)
   * Read support for Reftek 130 (rt130) waveform data,
     obspy.io.reftek (see obspy#1433)
   * Add Nordic format (s-file) read/write (see obspy#1517)
   * Read and write support for events in the SCARDEC catlogue format
     (see obspy#1391).
   * Read support for IASPEI ISF ISM 1.0 Bulletin event data,
     (see obspy#1946)
   * Write support for AH (Ad Hoc version 1) format (see obspy#1754)
   * Client to access the Nominal Response Library (NRL) (see obspy#1185).
   * `obspy.read_inventory()` can now read dataless SEED and RESP files
     (see obspy#1185).
   * change version number scheme for scenarios when no official version number
     can be determined (see obspy#1889 and obspy#1916)
   * Support for the IRIS Federator and EIDAWS FDSNWS web routing services
     (see obspy#1779 and obspy#1919).
 - obspy.core:
   * UTCDateTime is now based on nanoseconds (long) instead of a unix
     timestamp in microseconds (float) - resulting in higher precision and
     support for years 1-9999 (see obspy#1325)
   * Ensure that Trace.data is always C-contiguous in memory (see obspy#1732)
   * Event/ResourceIdentifier is now object aware, meaning even if two
     objects share a resource_id the distinct objects will be returned with
     the get_referred_object method provided both are still in scope. If one
     of the objects gets garbage collected, however, a warning will be issued
     and the behavior will be the same as before (see obspy#1644).
   * Better error message when attempting to write invalid QuakeML resource
     ids (see obspy#1699).
   * Stream/Trace.write() can now autodetect file format from file extension
     (see obspy#1321).
   * New convenience property `.matplotlib_date` for `UTCDateTime` objects to
     get matplotlib datetime float representation (which can be used in
     time-based matplotlib axes, e.g. by Stream.plot(); see obspy#1339).
   * Trace.times() has new options `type` and `reftime` to support fetching an
     array of sampletimes in various different timing varieties ("relative":
     the old default, float relative to trace starttime or `reftime` in
     seconds; "utcdatetime": absolute times as UTCDateTime objects;
     "timestamp": array of float POSIX timestamps, compare
     `UTCDateTime.timestamp`; "matplotlib": array of float matplotlib dates,
     useful for plotting on matplotlib time axes; see obspy#1307)
   * A trace's stats.network/station/location/channel can now also be set in
     one line using a SEED ID string (e.g. `trace.id = "GR.FUR..HHZ"`,
     see obspy#1439).
   * Instrument correction for response list stages originating from inventory
     objects (see obspy#1514).
   * `Stream.rotate(...)` can now also be used to rotate unaligned channels to
     Z-N-E, given an Inventory (see obspy#1310)
   * Non finite floats (NaN, inf, -inf) can now no longer be set for all
     event objects (see obspy#1597).
   * Instrument responses can now also be calculated for a given list of
     frequencies (see obspy#1598).
   * Order of extra tags for event type classes serialized to QuakeML can now
     be controlled by using an OrderedDict (see obspy#1617)
   * Bode plots can now optionally plot the phase in degrees (see obspy#1763).
   * `Stream.select()` now also works on the component level if channels only
     have one letter (see obspy#1847).
   * Now strips all invalid characters from the temporary filenames used for
     downloading data using the `read_X()` methods (see obspy#1958).
 - obspy.clients.earthworm:
   * Much faster trace unpacking (see obspy#1762).
 - obspy.clients.fdsn:
   * empty SEED codes (e.g. ``network=''``) will now be properly sent to the
     server as options and not omitted, which led to wildcard matching (for
     details see obspy#1578)
   * The mass downloader now has `exclude_networks` and `exclude_stations`
     arguments to not download certain pieces of data. (see obspy#1305)
   * The mass downloader can now download stations that are part of a given
     inventory object.
   * The mass downloader now also works with restricted data. (See obspy#1350)
   * No data (HTTP 204) responses now raise `FDSNNoDataException` rather than
     the more general `FDSNException`.
   * Fixing cross implementation of bulk waveform and station requests (see
     obspy#1685).
   * Adding mappings for the TEXNET (see obspy#1852) and the ICGC (see obspy#1902)
     services.
   * Support for the non-standard EIDA token authentication (see obspy#1928).
 - obspy.imaging:
   * The functionality behind the `obspy-scan` command line script has been
     refactored into a `Scanner` class so that it can be reused in custom
     workflows. (see obspy#1444)
 - obspy.imaging.cm:
   * new colormap: viridis_white. This is a modification of viridis that
     goes to white instead of yellow but remains perceptually uniform. It
     is especially useful for printing when an image should merge with the
     white background.
 - obspy.imaging.waveform:
   * Support for filling the wiggles when plotting sections (horizontal and
     vertical, see obspy#1445).
 - obspy.io.arclink:
    * Read support for Arclink Inventory XML (see obspy#1539)
    * default for `route` parameter in metadata requests is changed to `False`
      (see obspy#1756)
 - obspy.io.ascii:
    * Custom formatting of sample values when writing SLIST and TSPAIR.
 - obspy.io.datamark:
    * Renamed without deprectation to obspy.io.win to match its original name.
      Datamark is a datalogger, saving the WIN format.
 - obspy.io.gse2:
    * Read support for GSE2.0 bulletin (see obspy#1528)
 - obspy.io.nlloc:
    * Also parse author information and COMMENT line (see obspy#1484)
    * Fix reading hypocenter files created by NonLinLoc versions of the 6.0.x
      beta branch (see obspy#1760 and obspy#1783)
 - obspy.io.quakeml:
    * Read and write support for nested custom tags (see obspy#1463)
    * Fix some minor bugs that could lead to empty stub elements, e.g. like
      empty MomentTensor when reading and later writing again a QuakeML file
      with a FocalMechanism but no MomentTensor, potentially resulting in
      QuakeML files that breach the QuakeML schema (see obspy#1896)
 - obspy.io.seiscomp:
    * Read and write support for SC3ML event (see obspy#1638 and obspy#1848)
    * Fix bug where files with arbitrary publicIDs and files with missing
      depth, latitude, longitude, or elevation tags could not be read
      (see obspy#1817)
 - obspy.io.stationtxt:
    * Write support for stationtxt format (see obspy#1466)
 - obspy.io.stationxml:
    * Read and write support for custom tags (see obspy#1024)
    * No longer add the (unused) time zone field to StationXML datetimes to
      follow the example of big data centers. (see obspy#1572)
    * Level of detail can be specified during inventory write (see obspy#1830)
      using the level keyword (one of: network, station, channel, response).
    * Skip empty and incomplete channels during reading (see obspy#1839, obspy#1840).
 - obspy.io.segy:
    * Fixing an issue when comparing two still packed SEG-Y trace headers
      (see obspy#1735).
    * Iterative reading of large SEG-Y and SU files with
      `obspy.io.segy.segy.iread_segy` and `obspy.io.segy.segy.iread_su`.
      (see obspy#1400).
    * Write correct revision number (see obspy#1737).
    * Textual headers will now always contain the file revision number and the
      end header mark if nothing else exists at these positions (see obspy#1738).
    * The SEG-Y format detection now also checks the format version number
      (see obspy#1781).
    * Enable reading SEG-Y files that have day of year 0 in trace header
      (see obspy#1722).
    * Write textual file headers also if given as a text string
      (see obspy#1811, obspy#1813).
 - obspy.io.css:
   * Read support for NNSA KB Core format waveform data. (see obspy#1332)
 - obspy.io.mseed:
   * New generic get_flags() utility function able to retrieve statistics
     about all fixed header flags and the timing quality. This makes the
     get_timing_and_data_quality() function obsolete which is thus
     deprecated and will be removed with the next release. The get_flags()
     function is also much faster. (see obspy#1141)
   * Always hook up the libmseed logging to its Python counterpart to avoid
     some rare segfaults. (see obspy#1658)
   * Update to libmseed v2.19.5 (see obspy#1703, obspy#1780, obspy#1939).
   * Correctly read MiniSEED files with a data offset of 48 bytes (see obspy#1540).
   * InternalMSEEDReadingError now called InternalMSEEDError and
     InternalMSEEDReadingWarning now called InternalMSEEDWarning as both
     can now also be raised in non-reading contexts (see obspy#1658).
   * Should no-longer segfault with arbitrarily truncated files (see obspy#1728).
   * Will now raise an exception when attempting to directly read mini-SEED
     files larger than 2048 MiB (obspy#1746).
   * `.stats.mseed` attributes are no longer per-file but per-trace where
     applicable (see obspy#1782).
   * `get_record_information()` - Don't fail if the word order is invalid.
 - obspy.io.nlloc:
   * Set preferred origin of event (see obspy#1570)
 - obspy.io.nordic:
   * Add Nordic format (s-file) read/write (see obspy#1517)
 - obspy.io.win:
   * see obspy.io.datamark.
 - obspy.io.xseed:
   * Added azimuth and dip to the get_coordinates() function. (see obspy#1315)
   * Fixing some issues with the get_resp() output on Python 3 (see obspy#1748).
   * Can now also parse RESP files (see obspy#1185).
   * Can transform responses in the Parser object to ObsPy Inventory objects
     (see obspy#1185).
 - obspy.scripts:
   * obspy-scan command line script now also plots and prints overlaps
     alongside gaps (see obspy#1366)
   * obspy-plot now has option to disable min/max plot (see obspy#1583)
 - obspy.signal:
   * fixed a bug in calibration.rel_calib_stack (resulting amplitude response
     had wrong scaling if using non-default "overlap_fraction", see obspy#1821)
   * fixed a bug in coincidence_trigger() with event templates. when a template
     with mismatching SEED ID was encountered all following (potentially valid)
     templates were skipped as well (see obspy#1850)
   * New obspy.signal.quality_control module to compute quality metrics from
     MiniSEED files. (see obspy#1141)
   * New correlate function for calculating the cross-correlation function
     (new implementation based on Scipy).
     To calculate the shift of the maximum of the cross correlation use
     xcorr_max. The old xcorr function is deprecated but currently still
     exists (see obspy#1585).
   * New obspy.signal.regression module to compute linear regressions, with or
     without weights, with or without allowing for an intercept. (see obspy#1716,
     obspy#1747)
   * add new plotting capabilities to PPSD (temporal variations per frequency
     and spectrogram-like plot) and also make underlying processed PSDs
     available via `PPSD.psd_values` property (see obspy#1327)
   * Fixed bug in `rotate2zne()` for non-orthogonal configurations
     (see obspy#1913, obspy#1927).
   * Fixed build warnings in evalresp, partially backported from evalresp
     4.0.6 (see obspy#1939).
 - obspy.taup:
   * Add obspy.taup.taup_geo.calc_dist_azi, a function to return the distance,
     azimuth and backazimuth for a source - receiver pair. (see obspy#1538)
   * Fixing calculations through very small regional models. (see obspy#1761)
   * Updated ray path plot method, added travel time plot method, and wrapper
     functions for both ray path and travel time plotting. (see obspy#1501, obspy#1877)
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