Stars
Repository to the R package nowcaster, nowcasting with INLA
ggplot-based graphics and useful functions for GAMs fitted using the mgcv package
In-development R package to nowcast right-truncated epidemiological data
Code to test Rt estimates against synthetic data
A repository to store COVID-19 variant nowcasts collected as a modeling hub.
Code for the paper: Forecasting influenza hospital admissions within English sub-regions using hierarchical generalised additive models
Estimating the generation time for influenza transmission using household data in the United States
Code repository for norovirus nowcasting paper winter 2023/24
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observa…
R library to estimate the Effective Reproduction Number (Rt)
Estimate epidemiological delay distributions with brms
R package for real-time Rt estimation with penalized splines
A drop-in replacement for dplyr, powered by DuckDB for speed.
An extremely fast Python package and project manager, written in Rust.
Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
DuckDB is an analytical in-process SQL database management system