8000 test: [Automatic] Constraints upgrades: `napari`, `numpy`, `pydantic`, `sentry-sdk`, `six`, `superqt`, `tifffile` by Czaki · Pull Request #1229 · 4DNucleome/PartSeg · GitHub
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test: [Automatic] Constraints upgrades: napari, numpy, pydantic, sentry-sdk, six, superqt, tifffile #1229

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merged 1 commit into from
Dec 16, 2024
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test: [Automatic] Constraints upgrades: napari, numpy, pydantic, sentry-sdk, six, superqt, tifffile #1229

merged 1 commit into from
Dec 16, 2024

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@Czaki Czaki commented Dec 9, 2024 •
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This PR is automatically created and updated by PartSeg GitHub
action cron to keep bundle dependencies modules up to date.

The updated packages are:

  • attrs
  • certifi
  • coverage
  • dask
  • debugpy
  • napari
  • napari-console
  • numpy
  • pydantic
  • pyqt6
  • pyqt6-qt6
  • pyqt6-sip
  • rpds-py
  • scikit-image
  • sentry-sdk
  • six
  • superqt
  • tifffile
  • typer

Summary by CodeRabbit

  • New Features

    • Updated various package dependencies to their latest versions, ensuring improved functionality and compatibility.

  • Bug Fixes

    • Resolved potential issues by upgrading libraries such as numpy, scikit-image, and sentry-sdk.

  • Chores

    • Routine maintenance of dependency files across multiple Python versions to reflect the latest package updates.

@Czaki Czaki added the skip check PR title skip spellcheking PR title label Dec 9, 2024
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sourcery-ai bot commented Dec 9, 2024 •
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Reviewer's Guide by Sourcery

This is an automated dependency update PR that updates several Python package version constraints across multiple Python version-specific constraint files. The updates include packages like coverage, dask, napari-console, numpy, pydantic, pyqt6-sip, rpds-py, sentry-sdk, six, and typer.

No diagrams generated as the changes look simple and do not need a visual representation.

File-Level Changes

Change Details Files
Update dependency version constraints across multiple Python versions
  • Update version constraints for coverage, dask, and napari-console
  • Update version constraints for numpy and pydantic
  • Update version constraints for pyqt6-sip and rpds-py
  • Update version constraints for sentry-sdk, six, and typer
 requirements/constraints_py3.9.txt
requirements/constraints_py3.9_pydantic_1.txt
requirements/constraints_py3.10.txt
requirements/constraints_py3.10_pydantic_1.txt
requirements/constraints_py3.11.txt
requirements/constraints_py3.11_pydantic_1.txt
requirements/constraints_py3.12.txt
requirements/constraints_py3.12_docs.txt
requirements/constraints_py3.12_pydantic_1.txt
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coderabbitai bot commented Dec 9, 2024 •
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Walkthrough

This pull request includes updates to several dependency version specifications across multiple requirements files for Python 3.9, 3.10, 3.11, and 3.12. The versions of libraries such as attrs, certifi, coverage, dask, debugpy, napari, numpy, pydantic, pyqt6, rpds-py, sentry-sdk, six, superqt, tifffile, and typer have been incremented to their latest versions. These changes reflect routine maintenance to ensure compatibility and potentially integrate new features or fixes from the updated libraries.

Changes

File Path Change Summary
requirements/constraints_py3.10.txt Updated versions: attrs to 24.3.0, certifi to 2024.12.14, coverage to 7.6.9, dask to 2024.12.0, debugpy to 1.8.11, napari to 0.5.5, napari-console to 0.1.2, numpy to 2.2.0, pydantic to 2.10.3, pyqt6 to 6.8.0, pyqt6-sip to 13.9.1, rpds-py to 0.22.3, scikit-image to 0.25.0, sentry-sdk to 2.19.2, six to 1.17.0, superqt to 0.7.0, tifffile to 2024.12.12, and typer to 0.15.1.
requirements/constraints_py3.10_pydantic_1.txt Updated versions: attrs to 24.3.0, certifi to 2024.12.14, coverage to 7.6.9, dask to 2024.12.0, debugpy to 1.8.11, napari to 0.5.5, napari-console to 0.1.2, numpy to 2.2.0, pyqt6 to 6.8.0, pyqt6-sip to 13.9.1, rpds-py to 0.22.3, scikit-image to 0.25.0, sentry-sdk to 2.19.2, six to 1.17.0, and typer to 0.15.1.
requirements/constraints_py3.11.txt Updated versions: attrs to 24.3.0, certifi to 2024.12.14, coverage to 7.6.9, dask to 2024.12.0, debugpy to 1.8.11, napari to 0.5.5, napari-console to 0.1.2, numpy to 2.2.0, pydantic to 2.10.3, pyqt6 to 6.8.0, pyqt6-sip to 13.9.1, rpds-py to 0.22.3, scikit-image to 0.25.0, sentry-sdk to 2.19.2, six to 1.17.0, and typer to 0.15.1.
requirements/constraints_py3.11_pydantic_1.txt Updated versions: attrs to 24.3.0, certifi to 2024.12.14, coverage to 7.6.9, dask to 2024.12.0, debugpy to 1.8.11, napari to 0.5.5, napari-console to 0.1.2, numpy to 2.2.0, pyqt6 to 6.8.0, pyqt6-sip to 13.9.1, rpds-py to 0.22.3, scikit-image to 0.25.0, sentry-sdk to 2.19.2, six to 1.17.0, and typer to 0.15.1.
requirements/constraints_py3.12.txt Updated versions: attrs to 24.3.0, certifi to 2024.12.14, coverage to 7.6.9, dask to 2024.12.0, debugpy to 1.8.11, napari to 0.5.5, napari-console to 0.1.2, numpy to 2.2.0, pydantic to 2.10.3, pyqt6 to 6.8.0, pyqt6-sip to 13.9.1, pyside6 to 6.8.1, rpds-py to 0.22.3, scikit-image to 0.25.0, sentry-sdk to 2.19.2, six to 1.17.0, and typer to 0.15.1.
requirements/constraints_py3.12_docs.txt Updated versions: attrs to 24.3.0, certifi to 2024.12.14, dask to 2024.12.0, debugpy to 1.8.11, napari to 0.5.5, napari-console to 0.1.2, numpy to 2.2.0, pydantic to 2.10.3, pyqt6 to 6.8.0, pyqt6-sip to 13.9.1, rpds-py to 0.22.3, sentry-sdk to 2.19.2, six to 1.17.0, and typer to 0.15.1.
requirements/constraints_py3.12_pydantic_1.txt Updated versions: attrs to 24.3.0, certifi to 2024.12.14, coverage to 7.6.9, dask to 2024.12.0, debugpy to 1.8.11, napari to 0.5.5, napari-console to 0.1.2, numpy to 2.2.0, pyqt6 to 6.8.0, pyqt6-sip to 13.9.1, rpds-py to 0.22.3, scikit-image to 0.25.0, sentry-sdk to 2.19.2, six to 1.17.0, and typer to 0.15.1.
requirements/constraints_py3.9.txt Updated versions: attrs to 24.3.0, certifi to 2024.12.14, coverage to 7.6.9, debugpy to 1.8.11, napari to 0.5.5, napari-console to 0.1.2, numpy to 2.2.0, pydantic to 2.10.3, pyqt6 to 6.8.0, pyqt6-sip to 13.9.1, rpds-py to 0.22.3, sentry-sdk to 2.19.2, six to 1.17.0, and typer to 0.15.1.
requirements/constraints_py3.9_pydantic_1.txt Updated versions: attrs to 24.3.0, certifi to 2024.12.14, coverage to 7.6.9, debugpy to 1.8.11, napari to 0.5.5, napari-console to 0.1.2, rpds-py to 0.22.3, sentry-sdk to 2.19.2, six to 1.17.0, pyqt6 to 6.8.0, pyqt6-sip to 13.9.1, and typer to 0.15.1.

Possibly related PRs

🐇 In the garden, we hop and play,
With updated packages, hip-hip-hooray!
Dependencies fresh, like morning dew,
Bugs and fixes, all brand new!
So let’s rejoice, with a joyful cheer,
For a smoother code, we hold so dear! 🌼✨

📜 Recent review details

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📥 Commits

Reviewing files that changed from the base of the PR and between 8c33bf0 and 85bfe53.

📒 Files selected for processing (9)
  • requirements/constraints_py3.10.txt (13 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (12 hunks)
  • requirements/constraints_py3.11.txt (13 hunks)
  • requirements/constraints_py3.11_pydantic_1.txt (12 hunks)
  • requirements/constraints_py3.12.txt (13 hunks)
  • requirements/constraints_py3.12_docs.txt (12 hunks)
  • requirements/constraints_py3.12_pydantic_1.txt (12 hunks)
  • requirements/constraints_py3.9.txt (11 hunks)
  • requirements/constraints_py3.9_pydantic_1.txt (10 hunks)
🚧 Files skipped from review as they are similar to previous changes (9)
  • requirements/constraints_py3.9_pydantic_1.txt
  • requirements/constraints_py3.9.txt
  • requirements/constraints_py3.11_pydantic_1.txt
  • requirements/constraints_py3.12_docs.txt
  • requirements/constraints_py3.10_pydantic_1.txt
  • requirements/constraints_py3.12.txt
  • requirements/constraints_py3.10.txt
  • requirements/constraints_py3.12_pydantic_1.txt
  • requirements/constraints_py3.11.txt

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sourcery-ai[bot]
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Hey @Czaki - I've reviewed your changes and they look great!

Here's what I looked at during the review
  • 🟢 General issues: all looks good
  • 🟢 Security: all looks good
  • 🟢 Testing: all looks good
  • 🟢 Complexity: all looks good
  • 🟢 Documentation: all looks good
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@Czaki Czaki added this to the 0.16.0 milestone Dec 9, 2024
@Czaki Czaki force-pushed the auto-dependency-upgrades branch from 8c33bf0 to 85bfe53 Compare December 16, 2024 08:19
@Czaki Czaki changed the title test: [Automatic] Constraints upgrades: numpy, pydantic, sentry-sdk, six test: [Automatic] Constraints upgrades: napari, numpy, pydantic, sentry-sdk, six, superqt, tifffile Dec 16, 2024
@sonarqubecloud SonarQubeCloud
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Quality Gate Passed Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud

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codecov bot commented Dec 16, 2024 •
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 93.15%. Comparing base (287f452) to head (85bfe53).
Report is 21 commits behind head on develop.

Additional details and impacted files 
@@             Coverage Diff             @@
##           develop    #1229      +/-   ##
===========================================
+ Coverage    93.13%   93.15%   +0.01%     
===========================================
  Files          210      210              
  Lines        33217    33217              
===========================================
+ Hits         30938    30943       +5     
+ Misses        2279     2274       -5

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@Czaki Czaki merged commit cf4bdaf into develop Dec 16, 2024
59 checks passed
@Czaki Czaki deleted the auto-dependency-upgrades branch December 16, 2024 10:47
@coderabbitai coderabbitai bot mentioned this pull request Feb 3, 2025
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