Stars
Repo for the Cambridge Centre for Proteomics, University of Cambridge, "Expression Proteomics Course"
Nanopore demultiplexing, QC and alignment pipeline
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Demultiplexing pipeline for sequencing data
Amplicon sequencing analysis workflow using DADA2 and QIIME2
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …
Convenience functions for microbiome data pre-processing.
Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
Accurate sample inference from amplicon data with single nucleotide resolution
A beautiful, simple, clean, and responsive Jekyll theme for academics
Open source code for AlphaFold 2.
Apuntes personales sobre estadística, machine learning y lenguaje de programación R