10000 Nyaml2nxdl bug by RubelMozumder · Pull Request #78 · FAIRmat-NFDI/pynxtools · GitHub

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Nyaml2nxdl bug#78

Merged

RubelMozumder merged 61 commits intomasterfrom

Mar 27, 2023

Commits on Mar 23, 2023

debug: parsing docs for elements of enumeration
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Bug: YAML does not accept scape sequences other than
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Bug: YAML does not accept scape sequences other than
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last debug continues
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Bug Fixes: 'encoding' is included in root level xml doc
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"" is converted to &qout !!! Non functional
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Including rare attributes in definition tag: ['deprecated', 'ignoreExtraGroups','ignoreExtraFields',
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Resolving extra 'ref' in dim attr and adding empty value in dim
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NXdata.yaml is working.
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Commenting out function 'second_level_attribute_handle' and 'third_nested_handle' instead making the code real recursive.
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finxing minoccurs and maxoccurs in nxdl->yaml
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Making xml_filed_handle recursive for nyaml->nxdl.
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removing unnecessary comments.
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Before adding extradict
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nxdl2yaml.py is working perfectly but still, a few discrepencies in dim.
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Fixing bug for dimension and type 'NX_CHAR'. nxdl.xml to yaml is apperntly working fine.
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Fixing bug for dimension and type 'NX_CHAR'. nxdl.xml to yaml is apperntly working fine.
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Removing NXchar which by default,
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fixing type attributes of attributes and axis and signal of fields
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Converter perfectly converting nxdl to yaml to nxdl.
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including deprecated in group as well as in field. Adding new helper file nyaml2nxdl_helper.py
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Attempt for passing pydocstyle.
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pydocstyle is done
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Accept some todo pylint is also done
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fixing some bug in dimension.
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pydocstyle and pylint paased working perfectly
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Making compatible the nyaml2nxdl converter for precreated tests
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Adding cheanging a few data files provied for test. The cganges includes 'next line' and comverting the file name 'yml' to 'yaml'.
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Renaming file from yml to yaml
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NXfilelineError.yaml is passed
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passing test: test_link, test_docs, test_nxdl2nyaml_doc_from_nxdl, test_fileline_error, test_symnols, test_attributes. test_extends
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tests in going on
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test_xml_parsing is passed.
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All tests are successfully passed.
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some rearraging of the code parts
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all tests got passed.
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Start of testing of full nxdl file.
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implement choice element and testing is perfect except some inconsistency in doc under dim and recomened in field
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recomended and docs for dim is solved
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adding check_for_skiped_attributes function in forward process
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Check optionality function
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Passing pydocstyle and pylint.
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Passing pydocstyle and pylint.
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deguging ':' that comes inside doc or attribute value but not allowed to pass to yaml library.
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Ordering attributes from nxdl to yaml.
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An attempt to 'order definition attributes' and 'inluding copy rights note'. Use example to explain: ~/Nomad-FAIRmat/NomadGH/GH_Clone/nomad-parser-nexus/tests/data/nyaml2nxdl/Ref_NXentry.nxdl.xml
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nxdl to yaml the order has reservered except 'name and type* and 'dim index and value'.
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Odering: Definition, group, link, choice and attribute are done in nxdl
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All the section with correct attribute order are done.
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test Test_links is passed
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test_doc is passed
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Pydocstyle, pylint, and mypy are passed.
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Fixing some errors.
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Fixing bug: NXtranformation comes in deprecated, which blab condition for searching name with NX or group with NX
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Adding 'exists' as xml attribute.
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Attempt to keep indentation in doc. Before it would come as on the same level, without regarding under indentation or overindentation.
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Fixing extra new line and ':' str in xml file.
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Small bug.
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Removing unnecessary empty line spaces starting and ending of doc.
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Setting all the tests, mypy, pydocstyle, and pylint correctly.
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Some modifications in README.md file
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