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Python 4 1 Updated Dec 21, 2024

fragment-scale peak calling for cfRNA analysis

R 6 1 Updated May 14, 2025

prediction of bacteria transcription termination

Python 2 Updated Jun 29, 2023

ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by first scanning a single input sequence to identify regions …

Python 19 8 Updated Nov 11, 2022

[G]enomic [P]ositioning with [Py]thon

Python 11 2 Updated Nov 14, 2024

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

Jupyter Notebook 23,238 15,479 Updated Dec 22, 2023

Machine learning, in numpy

Python 16,102 3,803 Updated Oct 29, 2023

A tool for extracting region-based phasing features from cell-free DNA

Python 1 2 Updated Jan 24, 2023

R package for CRAG

R 11 4 Updated Feb 17, 2025

A flexible framework for nucleosome profiling of cell-free DNA

Python 27 20 Updated Jul 27, 2023

RNA secondary structure prediction incorporating experimental constraints

C++ 5 2 Updated Mar 23, 2020

REDItools are python scripts to investigate RNA editing at genomic scale.

Python 66 35 Updated Oct 23, 2024

snakmeke B4B3 pipeline to precess scNanoHi-C data

R 6 Updated Dec 9, 2023

Pipeline-for-multiomics

R 4 1 Updated Oct 12, 2023

Korek Api

594 131 Updated Oct 22, 2024

Open-source plugins of Hiplot (ORG) visualization platform. Openbiox mirror of https://github.com/openbiox/hiplot-org-plugins.

R 37 5 Updated May 4, 2025

Coordinate point location of game for generating 3d maps.

779 364 Updated Apr 26, 2023

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

Python 141 30 Updated Oct 28, 2023

status of GLaDOS

2,530 336 Updated Aug 12, 2023

CSAR - ChIP-Seq Analysis in aRabidopsis thaliana

Shell 3 1 Updated Feb 2, 2022
Perl 141 41 Updated May 14, 2018

TeachYourselfCS 的中文翻译 | A Chinese translation of TeachYourselfCS

20,240 3,253 Updated Jan 18, 2023
Python 2 1 Updated Aug 7, 2021

A tool to identify CLIP-seq peaks

Python 68 43 Updated Apr 27, 2023

CLIP-seq Analysis of Multi-mapped reads

Python 30 6 Updated Jul 20, 2021

fork of RSeQC python RNAseq metrics suit of tools

Python 48 18 Updated Jan 27, 2019

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

R 422 146 Updated Feb 18, 2025

Unsorted scripts for bioinformatics

Python 61 25 Updated Jul 1, 2021

exRNA Biomarker Discovery for Liquid Biopsy

Jupyter Notebook 13 4 Updated Oct 29, 2020
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