Stars
Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
KosinskiLab / af3x
Forked from jkosinski/alphafold3Custom fork of AlphaFold 3 enabling explicit modeling of crosslinks
KosinskiLab / alphafold3x
Forked from jkosinski/alphafold3Explicit crosslinks in AlphaFold 3
AlphaLink: Integrating crosslinking MS data into OpenFold
Code for the ProteinMPNN paper
👋 Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz
English Template for PKU Doctoral Dissertation
List of computational protein design research labs
Generation of protein sequences and evolutionary alignments via discrete diffusion models
Protein hallucination and inpainting with RoseTTAFold
AI-powered ab initio biomolecular dynamics simulation
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
SchNetPack - Deep Neural Networks for Atomistic Systems
This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and force fields for coarse-grained molecular dynamics.
[WIP] Machine Learning Molecular ForceField Training and Deploying Framework
A beautiful, simple, clean, and responsive Jekyll theme for academics
SkyPilot: Run AI and batch jobs on any infra (Kubernetes or 16+ clouds). Get unified execution, cost savings, and high GPU availability via a simple interface.
DeepSeek-V2: A Strong, Economical, and Efficient Mixture-of-Experts Language Model
Symmetry Breaking in Diffusion Model Detected by Relaxed Group Convolution
Predict multiple protein conformations using sequence clustering and AlphaFold2.
Open source code for AlphaFold 2.
A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2