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blue-crab Public
lossless nanopore pod5 <=> s/blow5 file conversion
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buttery-eel Public
The buttery eel - a slow5 guppy/dorado basecaller wrapper
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pipeface Public
Forked from leahkemp/pipefaceNextflow pipeline to process long read ONT and/or pacbio HiFi data
Nextflow MIT License UpdatedMar 11, 2025 -
gpu-basecalling-benchmarks Public
GPU basecalling benchmarks and other relevant data
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deeplexicon Public
Signal based nanopore RNA demultiplexing with convolutional neural networks
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github-readme-stats Public
Forked from anuraghazra/github-readme-stats⚡ Dynamically generated stats for your github readmes
JavaScript MIT License UpdatedJul 18, 2024 -
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sigknow_read_until_api Public
A modification of the readfish changes to the ONT base readUntil API
GNU General Public License v3.0 UpdatedMay 31, 2024 -
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SquiggleKit Public
SquiggleKit: A toolkit for manipulating nanopore signal data
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interARTIC Public
InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
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HIVE-seq Public
HIVepsilon-seq - scalable characterisation of intact persistent proviral HIV reservoirs in women
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DeepSimulator_benchmark Public
Forked from liyu95/DeepSimulatorThe first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
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read_until_api Public
Forked from nanoporetech/read_until_apiRead Until client library for Nanopore Sequencing
8000Python Other UpdatedFeb 1, 2023 -
readfish Public
Forked from LooseLab/readfishRead Until scripts
Python GNU General Public License v3.0 UpdatedDec 13, 2022 -
bonito Public
Forked from nanoporetech/bonitoA PyTorch Basecaller for Oxford Nanopore Reads
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radian Public
Forked from comprna/radianNanopore direct RNA basecaller
Python GNU General Public License v3.0 UpdatedOct 27, 2022 -
RODAN Public
Forked from biodlab/RODANA fully convolutional architecture for basecalling nanopore RNA sequencing data
Python MIT License UpdatedOct 27, 2022 -
misc Public
Various scripts and how-to's related to bioinformatics, genomics, and nanopore sequencing
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CoVarPlot Public
CoVarPlot - Covarage Variant Plots for viral whole genome sequencing
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fast5_fetcher Public
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
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nanopore_NCM18 Public
Helpful scripts for working with Oxford Nanopore Sequencing data
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Deepbinner Public
Forked from rrwick/Deepbinnera signal-level demultiplexer for Oxford Nanopore reads
Python GNU General Public License v3.0 UpdatedAug 20, 2018
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