Stars
A repository for collecting GPU basecalling stats
🔬 Path to a free self-taught education in Bioinformatics!
Rust port of Lucide with support for Dioxus, Leptos and Yew.
Adaptive sampling client for nanopore devices; a streamy relative of Readfish
Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
Overview of our data for microbial genomic benchmarking
Create statistic summary of an Oxford Nanopore read dataset
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
Identification of differential RNA modifications from nanopore direct RNA sequencing
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
Protobuf and gRPC specifications for the MinKNOW API
Read-based phasing of genomic variants, also called haplotype assembly
Nextflow pipeline to process long read ONT and/or pacbio HiFi data
Super-fast and accurate demultiplexing of direct RNA-seq runs.
A bioinformatics tool for viewing and reporting base modification frequencies from BAM files
Tandem repeat expansion detection or genotyping from long-read alignments
A GlobalProtect VPN client for Linux, written in Rust, based on OpenConnect and Tauri, supports SSO with MFA, Yubikey, and client certificate authentication, etc.
A tool for somatic structural variant calling using long reads