Core
Examples on determining the common core microbiota for the given profiling data set, as in Salonen A, et al. (2012) The adult intestinal core microbiota is determined by analysis depth and health status, Clinical Microbiology and Infection 18:16–20. Examples with simulated data. See read.profiling to use your own data files:
library(microbiome)
data(peerj32);
mydata <- t(peerj32$microbes)
core <- createCore(mydata)# Core 3D visualization
tmp <- Core3D(core)# Core 2D visualization
tmp <- Core2D(core)tmp <- core_heatmap(mydata)