Releases: mskcc/lohhla
Releases · mskcc/lohhla
Fix mpileup reading error
Error catching for read.table when tumor.mpileup is empty
Error catching for read.table when tumor.mpileup is empty
bugfix for t.test and rbind
Merge pull request #10 from mskcc/bugfix/ErrorCatching more error catching
fix t-test error and decrease bin size
Merge pull request #8 from mskcc/bugfix/catch_t-test_error Update LOHHLAscript.R
fixed conditional for homozygous alleles
1.1.3 revised all() conditional
removed argument catch, branch feature/work_with_Nextflow
incorporates many of the bug fixes we've discussed
added changes for metadataparser
- added changes from master into feature/work_with_Nexflow
- attempt to solve this bug
Warning message:
In doTryCatch(return(expr), name, parentenv, handler) :
Run with coverageStep completed first -- skipping s_C_XMDNJP_P001_d-T.recal-hla_a!
Error in is.data.frame(x) : object 'combinedTable' not found
Calls: write.table -> is.data.frame
Execution halted
output `*.txt` files, use `quit(status=0)` and write error files
This should remove the majority of the exitcode 1 errors we see for Vaporware, but we will see
tumor-normal pair only for Nextflow
Revisions to LOHHLAscript.R for single tumor-normal pair
---outputDir is
39E3
no longer used