Releases 3.3.2
v3.3.2 - Tungsten Tamarin Patch 2
Latest
Template
Avoid overriding NFT_DIFF and NFT_DIFF_ARGS in nf-test action (#3606 ) and (#3619 )
fix nf-test scope to ignore nf-core module/swf tests (#3609 )
write github.run_id on pipeline template (#3637 )
Bump nf-schema to 2.4.2 (#3533 )
Bump the minimal Nextflow version to 24.10.5 (#3533 , #3667 )
CI - Only trigger nf-test action on pull_request (#3628 )
Fix link to nf-test GHA in README.md (#3630 )
Add accelerator directive for GPU-enabled processes (#3632 )
Update dependency prettier to v3.6.0 (#3641 ) and 3.6.2 (#3646 )
Add opt-in feature gpu (#3562 )
Update zentered/bluesky-post-action action to v0.3.0 (#3626 )
Linting
Fix linting of nf-test files content (#3603 )
Modules
Remove args stub from module template to satisfy language server (#3403 )
Fix modules meta.yml file structure (#3532 )
Fix wrong key when updating module outputs (#3665 )
Subworkflows
General
update id of ruff hook in pre-commit config (#3621 )
Fixes a bug with the test-datasets subcommand #3617
Pin python Docker tag to f2fdaec (#3623 )
Make changelog bot push to correct remote (#3638 )
Give unique button ids to help buttons in create app (#3645 )
Parallelize pytest runs and speed up coverage step (#3635 )
Update gitpod/workspace-base Docker digest to 77021d8 (#3649 )
Update error message for rocrate_readme_sync (#3652 )
Update nf-core modules info command after meta.yml restructuring (#3659 )
Enable parsing of multi-line config values (#3629 )
Version updates
Drop python 3.8, add tests with python 3.13 (#3538 )
Update python:3.13-slim Docker digest to 6544e0e (#3663 )
Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.2 (#3627 ,#3648 , #3661 )
Update dependency textual to v3.5.0 (#3636 )
Update pre-commit hook pre-commit/mirrors-mypy to v1.16.1 (#3624 )
You can’t perform that action at this time.