8000 CI: Simplify GitHub actions checks and update action versions by effigies · Pull Request #1141 · nipreps/mriqc · GitHub
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CI: Simplify GitHub actions checks and update action versions #1141

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Merged
merged 9 commits into from
Sep 13, 2023
Merged

CI: Simplify GitHub actions checks and update action versions #1141

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9da08f4
CI: Simplify GitHub actions checks and update action versions
effigies Sep 12, 2023
78d9bf6
CI: Test on Python 3.10
effigies Sep 12, 2023
85d4e9f
CI: Add concurrency groups to auto-cancel superseded runs
effigies Sep 12, 2023
87d154d
FIX path
effigies Sep 12, 2023
86c031f
CI: Are venvs chewing up space?
effigies Sep 12, 2023
efef5e9
CI: Restore pip cache
effigies Sep 12, 2023
d2d8986
CI: Make cache files Python version-specific to avoid collisions
effigies Sep 12, 2023
6d96c80
CI: Re-drop cache action, as it does not seem to save time
effigies Sep 13, 2023
50e08b2
CI: Unpin Python for flake8, use codespell action
effigies Sep 13, 2023
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73 changes: 29 additions & 44 deletions .github/workflows/pythonpackage.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,96 +10,81 @@ on:
pull_request:
branches: [ master, 'maint/*' ]

concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true

permissions:
contents: read

jobs:
build:
if: "!startsWith(github.ref, 'refs/tags/') && !contains(github.event.head_commit.message, '[skip ci]')"
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.8', '3.9', '3.11']
pip: ["pip==21.2", "pip~=23.0"]
python-version: ['3.8', '3.9', '3.10', '3.11']

steps:
- uses: actions/checkout@v2
- name: Fetch all tags (for setuptools_scm to work)
run: |
/usr/bin/git -c protocol.version=2 fetch --tags --prune --unshallow origin
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v1
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- uses: actions/cache@v1
with:
path: $HOME/.cache/pip
key: pip-cache-v1
restore-keys: |
pip-cache-
- name: Build in confined environment and interpolate version
- name: Build and check package
run: |
pipx run build
pipx run twine check dist/mriqc-*
- name: Interpolate version
run: |
python -m venv /tmp/buildenv
source /tmp/buildenv/bin/activate
python -m pip install -U build hatch hatchling pip twine docutils wheel

python -m build -s -w
python -m twine check dist/mriqc-*
EB01 mv dist /tmp/package
rm -rf mriqc.egg-info/
# Interpolate version
if [[ "$GITHUB_REF" == refs/tags/* ]]; then
TAG=${GITHUB_REF##*/}
fi
THISVERSION=$( python -m hatch version | tail -n1 | xargs )
THISVERSION=$( pipx run hatch version | tail -n1 | xargs )
THISVERSION=${TAG:-$THISVERSION}
echo "Expected VERSION: \"${THISVERSION}\""
echo "THISVERSION=${THISVERSION}" >> $GITHUB_ENV
- name: Install in confined environment [pip]
run: |
python -m venv /tmp/pip
source /tmp/pip/bin/activate
python -m pip install -U hatch hatchling "${{ matrix.pip }}" wheel "cython==3.0.0b2" "numpy ~=1.20" scipy
python -m pip install .
INSTALLED_VERSION=$(python -c 'import mriqc as qc; print(qc.__version__, end="")')
echo "VERSION: \"${THISVERSION}\""
echo "INSTALLED: \"${INSTALLED_VERSION}\""
test "${INSTALLED_VERSION}" = "${THISVERSION}"
rm -r /tmp/pip
- name: Install in confined environment [sdist]
run: |
python -m venv /tmp/install_sdist
source /tmp/install_sdist/bin/activate
python -m pip install -U hatch hatchling "${{ matrix.pip }}" wheel "cython==3.0.0b2" "numpy ~=1.20" scipy
python -m pip install /tmp/package/mriqc*.tar.gz
python -m pip install dist/mriqc*.tar.gz
INSTALLED_VERSION=$(python -c 'import mriqc as qc; print(qc.__version__, end="")')
echo "VERSION: \"${THISVERSION}\""
echo "INSTALLED: \"${INSTALLED_VERSION}\""
test "${INSTALLED_VERSION}" = "${THISVERSION}"
rm -r /tmp/install_sdist
- name: Install in confined environment [wheel]
run: |
python -m venv /tmp/install_wheel
source /tmp/install_wheel/bin/activate
python -m pip install -U hatch hatchling "${{ matrix.pip }}" wheel "cython==3.0.0b2" "numpy ~=1.20" scipy
python -m pip install /tmp/package/mriqc*.whl
python -m pip install dist/mriqc*.whl
INSTALLED_VERSION=$(python -c 'import mriqc as qc; print(qc.__version__, end="")')
echo "INSTALLED: \"${INSTALLED_VERSION}\""
test "${INSTALLED_VERSION}" = "${THISVERSION}"
rm -r /tmp/install_wheel

flake8:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python 3.9
uses: actions/setup-python@v1
with:
python-version: 3.9
- run: pip install flake8-pyproject
- run: flake8 mriqc/
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v4
- run: pipx run flake8-pyproject mriqc/

codespell:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python 3.9
uses: actions/setup-python@v1
with:
python-version: 3.9
- run: pip install codespell tomli
- run: codespell
- uses: actions/checkout@v4
- uses: codespell-project/actions-codespell@v2
0