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    19 repositories

    • Dynamic-Quadrupole-Selection

      Public
      Dynamic quadrupole selection is a data-independent acquisition (DIA) method. In this method, the quadrupole selection window is varied over the precursor accumulation time. This allows the product ions (formed by the fragmentation of the precursors) to have spectral intensities that are coupled to the m/z of their precursor ion.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 17, 2025May 17, 2025

    • Plasma-Tech-Comparison

      Public
      Code for the manuscript A Technical Evaluation of Plasma Proteomics Technologies used to perform data analysis and generate figures.
      R
      •
      MIT License
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • PhosphoAstral

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Aug 15, 2024Aug 15, 2024

    • LipiDex-2

      Public
      LipiDex 2 - software for liquid chromatography-mass spectrometry (LC-MS) lipidomics
      0•0•3•0•Updated Aug 9, 2024Aug 9, 2024

    • Transcriptomics

      Public
      C#
      •0•0•0•0•Updated Jun 21, 2023Jun 21, 2023

    • Lipidex-RTLS-Support-Scripts

      Public
      This library contains the c# support scripts used to enable MSn-tree searching in LipiDex.
      C#
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 14, 2023Feb 14, 2023

    • DeepProteomeSequencing-Software

      Public
      All code used for visualization in the manuscript "Global Detection of Human Variants and Isoforms by Deep Proteome Sequencing" is available here
      Python
      •
      MIT License
      •0•4•0•0•Updated Feb 13, 2023Feb 13, 2023

    • LipiDexSpectrumAnnotator

      Public
      C# script to annotate LipiDex spectral matches from PeakFinder and Spectrum Searcher modules
      C#
      •
      MIT License
      •0•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • Argonaut

      Public
      Repository for the Coon Lab Data Viewer
      JavaScript
      •
      MIT License
      •3•3•2•0•Updated Apr 29, 2022Apr 29, 2022

    • MITOMICS

      Public
      Code base for MITOMICS project
      R
      •
      MIT License
      •0•2•0•0•Updated Jan 21, 2022Jan 21, 2022

    • IPSA

      Public
      The Interactive Peptide Spectral Annotator
      JavaScript
      •
      MIT License
      •9•18•4•0•Updated Jun 9, 2020Jun 9, 2020

    • LipidGenie

      Public
      Source Code for the LipidGenie QTL Viewer
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Nov 14, 2019Nov 14, 2019

    • Lipid-DDA-Simulator

      Public
      Simulation of Lipidomic Data-Dependent Acquisition on the QE HF
      Java
      •
      MIT License
      •0•0•0•0•Updated May 27, 2019May 27, 2019

    • LipiDex

      Public
      Lipid identification software for discovery LC-MS/MS
      Java
      •
      MIT License
      •6•11•6•0•Updated Mar 29, 2019Mar 29, 2019

    • FAIMS-MzXML-Generator

      Public
      C#
      •
      MIT License
      •2•0•4•0•Updated Jun 18, 2018Jun 18, 2018

    • Y3K-Software

      Public
      Data analysis and GC/MS quantitation software used throughtout the Y3K project
      C#
      •1•4•0•0•Updated Sep 2, 2016Sep 2, 2016

    • Y3K-GC-Quantitation-Software

      Public
      Compiled executables, source code, and user documentation for all software used for quantification of Y3K GC-Orbitrap metabolome analysis data.
      C#
      •1•0•0•0•Updated Aug 25, 2016Aug 25, 2016

    • Compass

      Public
      Coon OMSSA (Open Mass Spectrometry Search Algorithm) Proteomic Analysis Software Suite.
      C#
      •8•12•2•0•Updated Oct 29, 2014Oct 29, 2014

    • NeuQuant

      Public
      Neucode Quantitation Software
      C#
      •0•0•0•0•Updated Jul 21, 2014Jul 21, 2014
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