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    22 repositories

    • Gressier_2022

      Public
      Github repository for the scRNA-seq and scATAC-seq analyses of Gressier et al. 2022 by Jonas Schulte-Schrepping
      MIT License
      •0•3•0•0•Updated Jan 13, 2023Jan 13, 2023

    • Transmission-of-trained-immunity

      Public
      Re-sequenced data for the reviewers from the paper "Transmission of trained immunity and heterologous resistance to infections across generations."
      R
      •1•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • COVID-19-blood-bulk-RNA-Seq

      Public
      all script and necessary resources to reproduce the figures
      HTML
      •2•5•0•0•Updated Jul 18, 2022Jul 18, 2022

    • Rosette-to-Lumen-stage-embryoids

      Public
      In this study Langkabel and Horne et al. present an embryo-like organoid cell culture model termed RtL-embryoids, that can be generated from a solely embryonic stem cell-based starting cell population using cellular reprogramming paradigms. The authors demonstrate that induction of trophoblast- or endoderm- stem cell lineage-specific transgenes …
      0•1•0•0•Updated Nov 8, 2021Nov 8, 2021

    • jsschrepping-Embgenbroich_2020

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 16, 2021Jul 16, 2021

    • swarm_learning

      Public
      Scripts for figures and calculations of the manuscript by Warnat-Herresthal el al. 2020
      Jupyter Notebook
      •37•195•4•0•Updated Jun 11, 2021Jun 11, 2021

    • Flye

      Public
      De novo assembler for single molecule sequencing reads using repeat graphs
      C++
      •
      Other
      •171•0•0•0•Updated Mar 24, 2021Mar 24, 2021

    • Temba-Kullaya-Pecht-et-al.-

      Public
      0•0•0•0•Updated Oct 6, 2020Oct 6, 2020

    • aml_classifer

      Public
      Code and figures of the manuscript by Warnat-Herresthal et al 2019
      HTML
      •6•0•0•0•Updated Jul 10, 2020Jul 10, 2020

    • Fujii_2020_COPD

      Public
      Scripts for our bulk COPD manuscript
      R
      •1•1•0•0•Updated Jun 18, 2020Jun 18, 2020

    • Kalafati_2020

      Public
      Github repository for the scATAC-seq analysis of Kalafati et al., 2020 by Jonas Schulte-Schrepping.
      MIT License
      •0•3•0•0•Updated Jun 18, 2020Jun 18, 2020

    • hisat2-preprocessing

      Public
      Python
      •
      MIT License
      •1•0•1•0•Updated Aug 20, 2019Aug 20, 2019

    • Shiny-Seq

      Public
      Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data
      R
      •
      GNU General Public License v3.0
      •33•21•0•0•Updated Apr 24, 2019Apr 24, 2019

    • r_docker

      Public
      Docker container for genomics analyses in R.
      R
      •
      MIT License
      •9•0•0•0•Updated Mar 13, 2019Mar 13, 2019

    • kallisto-qc

      Public
      Python
      •0•0•1•0•Updated Mar 11, 2019Mar 11, 2019

    • generic-qc

      Public
      Python
      •0•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • drop-seq-pipe-docker

      Public
      A simple docker wrapper of the dropSeqPipe https://github.com/Hoohm/dropSeqPipe
      Python
      •0•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • rna-seq-pipeline-base

      Public
      Dockerfile
      •0•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • DEGene-pipeline

      Public
      R
      •0•0•0•0•Updated Sep 19, 2018Sep 19, 2018

    • Dnajc22-regulation

      Public
      R
      •1•1•0•0•Updated Apr 11, 2017Apr 11, 2017

    • docker

      Public
      4•0•0•0•Updated Feb 17, 2017Feb 17, 2017

    • GOAna

      Public
      R
      •0•0•0•0•Updated Oct 23, 2015Oct 23, 2015
    0