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Showing results

Single-cell epigenomics analysis tools

Python 259 34 Updated May 2, 2025

code repository for manuscript - MSL2 ensures biallelic gene expression

R 2 Updated Dec 1, 2023

Oxford Nanopore's Basecaller

C++ 655 82 Updated May 21, 2025

All pdfs of Victor Eijkhout's Art of HPC books and courses

642 76 Updated Apr 12, 2024

CLI platform to experiment with codegen. Precursor to: https://lovable.dev

Python 54,175 7,134 Updated May 14, 2025

GPT4All: Run Local LLMs on Any Device. Open-source and available for commercial use.

C++ 73,373 8,014 Updated Mar 19, 2025

Webin command line submission program.

Java 33 5 Updated Mar 27, 2025

Evaluation of long-read support for the MGnify pipeline

Common Workflow Language 6 Updated Sep 23, 2022

Visual self-service analytics platform for big omics data.

R 125 36 Updated May 22, 2025

Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data

Python 13 1 Updated Apr 18, 2019

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Nim 745 100 Updated Jan 17, 2025

Curated collection of open-source bioinformatics tools

Shell 28 3 Updated Feb 5, 2019

📚 Freely available programming books

HTML 357,893 63,414 Updated May 2, 2025

check for passive words, weasel words, duplicate words, typographical errors and words strunk & white don't like

Perl 588 63 Updated Dec 10, 2018

slides

R 2 Updated Jul 31, 2012

Synthetic evolution of repeat consensi

Perl 2 Updated Jun 21, 2012

Extended demonstrations of the phyloseq package

R 6 1 Updated Jul 16, 2014

Simple analysis tool to manually annotate RepeatModeler sequences

Perl 1 4 Updated Nov 15, 2012

GeneAtlas is simple gene enrichment in normal tissue expression profiles.

Perl 1 Updated Sep 8, 2014

profile the repeat landscape in a genome

Perl 16 3 Updated Sep 9, 2014

Algorithms to compute DNA complexity

Perl 34 9 Updated May 24, 2022

the easiest way to use Google Maps

JavaScript 7,011 1,277 Updated Sep 22, 2020

Grid and ggplot2 based visualization for biological data

R 113 25 Updated Oct 30, 2023

The HTML Presentation Framework

JavaScript 68,910 16,728 Updated May 22, 2025

Simulation of family genome sequencing

Perl 2 Updated Jun 21, 2013

FakeSequence is an artificial non-functional realistic DNA sequence generator.

Perl 9 4 Updated Feb 7, 2024

Biostar Q&A

Python 586 230 Updated Jun 5, 2024

Rnaseq pipeline deliverable

Python 3 1 Updated Oct 6, 2011
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